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Automated cash application, ending the CSV era of reconciliation

Clarity Payment Hub replaces the gateway-CSV routine of matching payments to invoices and keying them into your ERP. Each payment posts in real time to the invoice it settles, tied to its gateway and bank records.

Updated November 3, 2026

Ending the CSV era of cash application

The biggest complaint of our clients is the monthly reconciliation. For a decade, the standard AR reconciliation workflow has looked the same: download yesterday's settlement report from the gateway, open it in a spreadsheet, match each transaction to an invoice in the ERP, key the cash receipt into the AR module, pray the totals agree with the bank deposit when it lands, and repeat. It's a monthly tax of several days on the AR team and the controller. It doesn't scale with invoice volume. And it produces a predictable crop of reconciliation mysteries at month-end when one transaction got double-entered, one was missed, or a chargeback landed and nobody caught it.

Before Payment Hub

CSV-based cash application

With Payment Hub

Real-time automated reconciliation

Automated reconciliation isn't only faster. The change isn't just speed — it's correctness. Because every transaction posts in real time with the gateway's settlement ID, chargeback reference, and return-code information already attached, the ERP record for each payment is complete from the moment it's written. There's no "reconcile this later" queue, because there's nothing sitting unposted waiting for reconciliation.

How Payment Hub reconciles every transaction

Eight mechanics run the reconciliation layer. Each one replaces a step the AR team is doing manually today — or worse, a step that's skipped and surfaces as a reconciliation mystery at month-end.

Portal Screenshot

Automated cash application in Clarity Payment Hub: payment history with each transaction's invoice, gateway, settlement batch and ERP posting status
The transaction history / reconciliation surface — every payment with its gateway reference, settlement batch, and ERP posting status in one view.
  • Per-transaction real-time ERP postingEvery customer payment — portal, MOTO, POS, ecommerce, ACH auto-debit — writes a cash-receipt record to your ERP through Clarity Connect the instant the gateway authorizes. Correct invoice, correct customer, correct GL account.
  • Settlement-batch trackingEvery transaction carries the gateway's settlement batch ID into the ERP. When the batch settles and funds into your bank, Payment Hub matches the deposit to the already-posted receipts — no spreadsheet cross-referencing.
  • NSF and chargeback auto-reversalACH returns (NSF R01, account closed R02, authorization revoked R07, and others) and card chargebacks ingest from the gateway in real time. Payment Hub writes a reversal to the ERP, re-opens the original invoice with the reason code, and routes the exception to AR.
  • Surcharge and fee separationSurcharges (customer pass-through) post as separate ERP lines from the invoice amount. Processing fees (merchant cost) deduct from deposits and post to a fee-expense GL account. Your revenue, surcharge income, and processing-cost lines stay distinct.
  • Multi-gateway, one reconciliationIf you run multiple gateways (Worldpay for card, Adyen for international, USAePay for branch, bank ACH), every transaction from every gateway flows through the same ERP posting path — one cash-GL view, one exception queue, one audit trail.
  • Credit memos and refunds as discrete entriesCredit memo applications close against specific invoices; refunds reference the original payment token and cash receipt; short-pays leave unpaid balances open with reason codes. Every adjustment is a separate, audit-traceable record — not a blended line.
  • Exception-only AR worklistThe transactions that need judgment — disputes, mismatched deposits, high-exposure returns, out-of-policy short-pays — surface in an AR worklist with full context (customer, invoice, gateway reference, bank deposit, history). Everything else reconciles itself.
  • Full audit trail & exportable reportsEvery transaction links gateway reference ID, settlement batch ID, bank deposit reference, ERP cash-receipt ID, invoice ID, customer, authorizing contact, method, and timestamp. Exportable reports for controllers, auditors, and month-end review.

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How transactions map to ERP postings

Every transaction type writes a specific set of records to your ERP. Here's the mapping Payment Hub runs automatically — no manual GL-code lookup, no miskeyed entries, no "where should this go" support tickets.

Clarity Payment Hub recent payment detail view showing a single transaction with all of its reconciliation metadata — invoice applied, customer, amount, method, gateway reference, settlement batch, ERP posting status, and audit trail
A single payment's full reconciliation trail — gateway reference, settlement batch, bank deposit, ERP cash-receipt ID, and audit metadata in one detail view.
Transaction typeERP records writtenGL accounts affected
Customer invoice payment WEB / TEL / CCD / cardCash receipt applied to invoice · Invoice closed (or partial balance)Debit Cash / GL Clearing · Credit AR
New ecommerce sales order cart-based checkoutSales order · Cash receipt (pay-now) OR open invoice (charge-to-account)Debit Cash / AR · Credit Revenue · (Tax, Shipping, etc.)
Credit memo applicationCredit-memo closure · Invoice balance reductionDebit Credit Memo Liability · Credit AR
Refund to original methodRefund transaction · Original-cash-receipt reversalDebit Revenue (reversal) / AR · Credit Cash
Compliant surcharge (enabled by state / network)Surcharge line separated from invoice amountCredit Surcharge Income (separate from revenue)
Processing fees (merchant cost on settlement)Fee deduction from deposit, expense entryDebit Processing-Fee Expense · Credit Cash (net deposit)
ACH return (NSF R01, R02, R07, etc.)Cash-receipt reversal · Invoice re-opens with reason codeDebit AR · Credit Cash (reversing the original posting)
Card chargebackChargeback-reserve entry · Invoice re-opens with dispute flagDebit Chargeback Reserve / AR · Credit Cash
Pay-on-account depositUnapplied-cash entry · Auto-apply to open invoices per rulesDebit Cash · Credit Customer-Credit Liability (initial) / AR (applied)
Gift card / store creditLiability decrement · Invoice settledDebit Gift-Card Liability · Credit AR

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ERP integration — where the reconciliation actually happens

Payment Hub's reconciliation isn't a separate reconciliation system — it's per-transaction writes to your existing ERP through Clarity Connect. Your ERP stays the book of record; Payment Hub makes sure the records are correct from the moment they're written.

  • Inbound from ERPCustomers, invoices, GL chart of accounts, payment terms, credit memos, chargeback reserves, bank-account references — all available for transaction routing and reconciliation logic in real time.
  • Outbound to ERPPer-transaction cash receipts, credit-memo applications, short-pay records with reason codes, refund transactions, chargeback reserves, surcharge lines, processing-fee expense entries, NSF reversals — each as a discrete correct record.
  • 25+ ERP connectorsNetSuite, Acumatica, Dynamics 365 BC / F&O, Dynamics GP / NAV, SAP S/4HANA Cloud and ECC, Sage 100 / 300 / Intacct, Oracle EBS, Epicor P21 / Kinetic / Eclipse / Eagle, Infor SX.e / CloudSuite, SYSPRO, Workday, Tyler, and more.
  • No ERP modificationsClarity Connect uses only documented, supported integration points. No schema changes, no ERP-side custom code, no plugins to maintain. Your GL structure, customer records, and bank-reconciliation module stay the way your controller set them up.

For cloud ERPs (NetSuite, Acumatica, Dynamics 365 BC, SAP S/4HANA Cloud), Clarity Connect talks directly to the ERP's cloud APIs. For on-premise ERPs, a lightweight outbound-only secure agent calls from inside your network — no inbound firewall ports, no VPN tunnel, no public ERP exposure.

Automated cash application in your ERP

Cash application means writing each payment to the right record in your ERP. That record differs by ERP:

All 25 ERP integrations are on the Payment Hub integrations page.

ERP Payment Reconciliation FAQ

The questions controllers, AR leads, and IT teams ask before rolling out Payment Hub's reconciliation layer.

What does Payment Hub replace in our current reconciliation workflow?

It replaces the CSV-based cash-application workflow most AR teams run today: download a settlement report from the gateway or bank, match each line to an invoice in the ERP, key the cash receipt into the ERP, then reconcile the deposit total at month-end against bank statements and gateway funding.

Does it actually reconcile against our bank deposits?

Yes. Payment Hub tracks each transaction from customer-payment through gateway-settlement through bank-deposit, with the settlement batch ID on both sides so the gateway's funded batches match the bank's ACH / card deposits automatically.

How does it handle NSF returns, chargebacks, and reversals?

When a transaction returns — ACH NSF (R01), account closed (R02), authorization revoked (R07), or a card chargeback — Payment Hub ingests the return code from the gateway in real time, writes a reversing entry to the ERP that re-opens the original invoice with the return reason attached, and routes the exception to your AR worklist.

What happens with surcharges, processing fees, and gateway costs?

Payment Hub separates cash receipts from surcharges and processing fees in the ERP posting — so your GL sees the true revenue (invoice amount), the surcharge income (pass-through, if enabled), and the processing-fee expense (merchant cost) as three distinct lines.

Does it handle credit memos, refunds, and adjustments?

Yes. Credit memo applications, refund transactions (to the original payment method), and short-pay adjustments all post as separate records in the ERP — not blended into cash receipts.

Related resources

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